ok this is fairly simple to do
the transmission and the rear end should be at the same angle
first off go get an angle gauge from a home depot or a parts store
i got mine from harbor freight
here is what it looks like
they are cheap
then get the angle off of your trans measure this at the output shaft yoke
should be like 3+ degrees or so
then set your rear end at the same angle only (negative)-3 degrees measure this at the pinion yoke
this is a great starting point
here are a couple illustrations of what a propper set-up should look like
note the angles are the same
hope that helps ya out a bit
randy