Was doing some looking around online and found people who have had success cutting tempered glass with diamond blades, rediculous amounts of lubricant/coolant, not turning the cutting blade a too high a RPM and a hell of a lot of luck. I also found articles that mention using a "special laser" and with some more research found they are talking specifically about CO2 lasers on a 3D arm so that the line can be cut at 90 degrees to the medium with a coolant stream. They said this cuts down on refraction within the medium and allows the cut to be made successfully. I also found the method below to turn your tempered glass into regular glass so you can just score it and cut it how you wish:
http://www.ehow.com/how_4678952_cut-tempered-glass.html Tempered glass cannot be cut, except with special laser cutters used by professionals. The only way to cut tempered glass is to first anneal the glass, which involves heating the glass to approximately 900 degrees, and then allowing the glass to cool slowly over approximately 8 hours. Step 1 Clean your tempered glass thoroughly and dry completely. Step 2 Place your tempered glass into a craft oven and set the temperature to 900 degrees Fahrenheit. Once the glass has reached this temperature, turn the oven off and allow the oven and the glass to cool for at least 8 hours before removing glass from oven. This process is known as annealing, and it removes stress from the glass. The glass is no longer tempered. Step 3 Lay the sheet of annealed glass on a clean, flat surface. Step 4 Place your T-square or other straight edge along your cut line. Step 5 Dip your glass cutter into kerosene for a smoother cut and then grab your cutter as you would a pencil. Starting at the edge of the glass, run your cutter along the straight edge, applying just moderate pressure. Make your scratch with one smooth motion, applying the same moderate pressure along the entire line. Do not run your cutter over the glass a second time. Step 6 Place your 1/4-inch dowel under the glass directly under the scratch. Put on your eye protection, and then apply a sharp downward pressure to the glass on either side of the dowel. The glass should snap cleanly along the dowel and scratch. Step 7 Rub your whetstone along the freshly cut edge of the glass as if you are lightly sanding the sharp edges. Round the edges slightly. This makes the glass stronger as well as safer to handle.Hope some of this helps,