No, you don't want to try to separate the motor from the valves. I've never done it and I don't think the factory wants you to based on the tamper resistant screws they used.
You just want to remove the whole thing from the throttle body and the try to clean the air passages.
Here is what the bottom side will look like.
There is an o-ring on it also. I'm not sure of the specs on it but it's probably a good idea to replace it. Coolant comes from the head, up through the throttle body, then into the IAC, and finally out the IAC on the outside fitting. If that o-ring goes bad, then you can get coolant into the intake manifold.